nely-epfl Goto Github PK

.github

ascending_neuron_screen_analysis_pipeline

Code for analyzing Ascending Neuron neural and behavioral data in Chen et al., 2022

axoid

Region-of-interest detection and tracking from 2-photon microscopy neural data

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cobar-exercises

cobar-miniproject-2023

Miniproject for BIOENG-456 Controlling behavior in animals and robots

cobar_2021_miniproject

code for the COBAR miniproject 2021

cs-433-project-2-outliers

cs-433-project-2-outliers created by GitHub Classroom

daart

Deep learning for animal action recognition toolbox

deepfly3d

Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

deepfly3dannotation

deepinterpolation

demotion5d

Remove sample movement from 5D microscopy data (xyz+time+color)

df3dpostprocessing

Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles

dn_networks

Repository holding the code for Braun et al. 2023

dn_population_analysis

drosophila2dpose

fanc-proofreading-priority-queue

Prioritizing segments to proofread in FANC

flydf

Utility function for managing pandas.DataFrames that hold data of multiple flies and trials.

flygym

Simulating embodied sensorimotor control with NeuroMechFly v2

flygym-laetitia-adhesion

Gym environments for NeuroMechFly in various physics simulators for Laetitia to implement adhesion

flygym-scratch

ARCHIVED | An internal fork of FlyGym. Used for student projects and code that are too exploratory to be a branch on the main FlyGym repo.

flyvis

A connectome constrained deep mechanistic network (DMN) model of the fruit fly visual system

ig-nmf-ground-walking-rl

Timo Achard's semester project: Reinforcement learning for ground walking on GPU-based NeuroMechFly

imaging-drosophila-vnc-and-cc

Code used for the paper "Imaging neural activity in the ventral nerve cord and cervical connective of behaving adult Drosophila" by Chen, Hermans, et al. 2018

liftpose3d

long-term-imaging-vnc-drosophila

makeaveragebrain

Make average template brains using CMTK’s avg_adm tool

motion_compensation

motionmapper

Sample implementation of the MotionMapper behavioral analysis algorithms