nedatavakoli Goto Github PK

awesome-community-detection

A curated list of community detection research papers with implementations.

awesome-network-embedding

A curated list of network embedding techniques.

claragenomicsanalysis

SDK for GPU accelerated genome assembly and analysis

come

Implementation of ComE algorithm

deepsimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

efficientsam

EfficientSAM: Leveraged Masked Image Pretraining for Efficient Segment Anything

from-0-to-research-scientist-resources-guide

Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.

graphslimmer

Reduced Genome Graphs with Haplotype Information

havg

hg

hged

Haplotype_aware variation graphs_edit disatance

hged_cpp

kann

A lightweight C library for artificial neural networks

llmspracticalguide

A curated list of practical guide resources of LLMs (LLMs Tree, Examples, Papers)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

modeling-and-clustering-genome-using-bidirectional-lstm

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

notebook

Jupyter Interactive Notebook

parahmm

Parallel Implementation of HMM on Multicore Platform

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

protobuf

Protocol Buffers - Google's data interchange format

psac

Parallel Suffix Array, LCP Array, and Suffix Tree Construction

pytorch-language-model

Simple LSTM-based word-level language model in PyTorch

racon-gpu

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

redmap

transformers-tutorials

This repository contains demos I made with the Transformers library by HuggingFace.

vf2

vg

tools for working with variation graphs

vit-pytorch

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

voter-turnout-prediction