Comments (3)
ah no actually The pipeline is not ending properly and stringtie does not run either...
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What's the stringtie error?
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I think it was because MultiQC failed (when I removed the MultiQC step I had no problem with Stringtie), I am running it now to see if it is fixed
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Related Issues (20)
- issue with merge_annotation_identifier in functional pipeline
- How to unset options in Interproscan? HOT 3
- issue with interproscan in functional pipeline HOT 21
- [functional annotation] HOT 3
- [AbinitioTraining] - Geneid HOT 2
- update busco for AnnotationPreprocessing pipeline, problems with singularity HOT 2
- Workflow refactor
- The problem with installation. HOT 1
- "WARN: There's no process matching config selector" warning message HOT 3
- Requested node configuration is not available in transcript_assembly HOT 7
- Update Github actions workflows to use Node16 instead of Node 12
- Installing and running pipelines questions HOT 3
- Bioconda env for interproscan not working for the functional_annotation subworkflow
- The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides HOT 7
- Abinitio pipeline - MODEL_SELECTION_BY_AED - HOT 1
- Update params.conda to conda.enabled
- Interproscan container is still flaky and causes issues with automated testing HOT 1
- Include local modules into nf-core HOT 1
- abinitio pipeline not copying proper folder into /projects/references/augustus/config/species/ HOT 3
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