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automated_dwiqc

Scripts to generate automated QC scores, based on criteria from the 2019 TIGRlab DWI working group

bigbrainwarp

BigBrainWarp

brainage

Predicted brain age analysis for Shahab et al. 2018

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

datman

scripts for managing xnat, QC, and data analysis

dsb_2018

epitome

scriptit modules for fmri analysis

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

mbp1413

Alessandro's code for U-Net and U-NetR

nrc_mar

Analyses for paper `What’s your pleasure? Exploring the predictors of leisure reading for fiction and nonfiction texts in adults.`

opt_callreport

This script produces the bi-weekly study report for the OPTIMUM-Neuro conference call (example report at http://rpubs.com/navona/OPT-Neuro_2018-05-17).

presurfer

Scripts to prepare MP2RAGE for Freesurfer

probtrackx

psyc2002

Coursework for PSY2002 (McIntosh & Buchsbaum) multivariate statistics course (2019)

r-novice-inflammation

Programming with R

shared-gpfa

slicer

Scripts to run single-shell deterministic tractography via Slicer with the ORG-800 atlas

spins_mrireport

This script produces counts of usable imaging data in the SPINS study, as visualized at https://rpubs.com/navona/SPINS_MRI.

stop-pd_acnp

These scripts produce the analyses reported for the STOP-PD study at ACNP 2018 (Voineskos & Neufeld et al.)

trekker

Testing of tractography as generated by `trekker` software