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amsi-2023

Some tutorial for the AMSI Winter School 2023

amsi-dilemma-tournament

A prisoner's dilemma evolutionary tournament, a la Axelrod, for the AMSI Winter School 2023.

carryover-local-adaptation

An individual-based simulation model for local adaptation in a heterogeneous landscape with carryover effects

cell_neighbours_isea3h_vince

homophilic-many-strategy-pgg

Code to accompany a study of the evolutionary dynamics of many strategies in a public goods game with genetic homophily

homophilic-threshold-pgg

Code to accompany a study of the evolutionary dynamics of cooperation in a public goods game with homophily

hulthen-2022-playground

Plot data from Hulthen et al (2022; J Anim Ecol)

inferring-undiscovered-species-extinctions

Singapore plants database and code for inferring the total number of species that went extinct, including species that went extinct before they were discovered.

jupyter_sandbox

kawecki-2017-fugitive-coexistence

Python scripts to simulate the invasion of adaptive versus plastic species corresponding to Fig 1 of Kawecki (2017; Ann. Zool. Fennici)

leviathan

A toy model that allows exploring every strategy and punishment rule in PGG using Boolean algebra

modgee-dark-extinctions-estimator

MODGEE statistical model to estimate species extinctions from museum records including species that went extinct before they could be recorded.

nadiahpk.github.io

niche-neutral-riau-birds

Using a niche-neutral model as a baseline to compare nestedness and species segregation patterns for birds in the Riau archipelago, Indonesia

parker-et-al-2013

New solutions for Parker et al. (2013)'s model on male resource allocation to pre- versus post-copulatory effort

permanent

C extension for Python, calculates the permanent

phenology-discrete-flocking-paridae

Octave code to find the evolutionarily singular breeding-time strategy for a strict, discrete-flocking resident bird species (e.g. marsh tit) in a phenologically heterogenous landscape.

phenology-stochastic

Octave code for an eco-evolutionary model determining a migratory bird's breeding date in a stochastically varying environment.

phenology-two-trait-migratory-bird

Octave code for an eco-evolutionary model describing the response of a migratory bird's arrival time and prelaying period to climate change.

playground-for-great-good

Mucking around with Haskell

playground-for-r

Tutes etc. for R

predation-arrival-time

Octave code to find the invasion fitness of migratory birds subject to predation arriving one day earlier or later than the prevailing arrival-day strategy.

pyeda

Python EDA

qualitative-modelling

Python code for qualitative modelling

replacement-clutches

A Jupyter notebook exploring the effect of replacement clutches on recruitment

settlement-time-game

Octave code to solve for the evolutionarily singular settling time strategy for a nesting bird (e.g. ovenbird) to avoid a nest predator (e.g. chipmunks)

seux

R package for inferring the total number of species that went extinct, including species that went extinct before they could be discovered.

sumatran-dispersal-dimorphism

An eco-evolutionary model to explore the possibility that a population dispersing between a large island and several small unstable islands may split into a high- and low-dispersal morph

tutic-2021-playground

Replicate Tutic (2021; J Math Sociol) and play with the model

vasconcelos-2014-playground

Replicate Vasconcelos et al. (2014; PNAS) and play with the model