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Genetic Logic Lab's Projects

biosimportal icon biosimportal

Flask API to facilitate communication between SBOLCanvas and iBioSim

books icon books

Issue tracker for errors in my textbooks

ibiosim icon ibiosim

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.

ibiosim-api icon ibiosim-api

An API for the Java-based synthetic biology simulation tool, iBioSim.

robustnessprediction icon robustnessprediction

This repository contains the models and results presented in the paper: Evaluating the Contribution of Model Complexity in Predicting Robustness in Synthetic Genetic Circuits

s2lpn icon s2lpn

Compiler from assembly files to labelled Petri nets

shai-et-al-supporting-information icon shai-et-al-supporting-information

This repository contains the data-files and scripts necessary to reproduce the results of the "Investigating And Modeling the Factors that Effects the Performance of Genetic Circuits" journal article.

verilog2lpn icon verilog2lpn

A compiler for asynchronous Verilog to labeled Petri nets

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