Shuai Wang's Projects
Predicted cell-cell interactions of the aging mouse brain
BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
Create heatmaps for the mouse brain and for the human brain
RNA-Seq data from mice to understanding the genetics of supernumerary tooth formation.
CDSeq R Package
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
My picture in Typora
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Data Visualization by R
A R/Bioconductor package to perform qRT-PCR data analysis with the ddCt method
Demo Repository for https://uc-carpentries.github.io/2020-01-11-bsdchicago/
Calculate and plot distributions of genomic ranges
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
Create anatograms using ggplot2
Plotting tool for brain atlases, in ggplot
ggseg3d R package for cisualising brain atlases through plotly
Updated implementation of the GSEA-P R application for modern R distributions
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
A pipeline to process m6A-seq data and down stream analysis.
Quarto
Config files for my GitHub profile.
Provide themed powerpoint presentation templates to rmarkdown
Materials for the RNAseq Lab and Data Analysis Workshop