musculusmus Goto Github PK

agingmousebrainccinx

Predicted cell-cell interactions of the aging mouse brain

beavr

BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data

bingleseq

BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses

bitfam

BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.

brain-heatmap

Create heatmaps for the mouse brain and for the human brain

brc_supernumerarytooth_gui_pid_19

RNA-Seq data from mice to understanding the genetics of supernumerary tooth formation.

cdseq_r_package

CDSeq R Package

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

cellprofilelibrary

cloudimg

My picture in Typora

combat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

datavisualization

Data Visualization by R

ddct_quantstudio3

A R/Bioconductor package to perform qRT-PCR data analysis with the ddCt method

demo

Demo Repository for https://uc-carpentries.github.io/2020-01-11-bsdchicago/

genomicdistributions

Calculate and plot distributions of genomic ranges

genomicsupersignature

Interpretation of RNAseq experiments through robust, efficient comparison to public databases

gganatogram

Create anatograms using ggplot2

ggseg

Plotting tool for brain atlases, in ggplot

ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

gsea_r

Updated implementation of the GSEA-P R application for modern R distributions

lab-website-template

(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more

m6a-seq_analysis_workflow

A pipeline to process m6A-seq data and down stream analysis.

manuscript-template-rstudio

Quarto

metatx.1.0

monocle-release

musculusmus

Config files for my GitHub profile.

ontoproc

pptxtemplates

Provide themed powerpoint presentation templates to rmarkdown

rnaseq_workshop

Materials for the RNAseq Lab and Data Analysis Workshop

scrna-seq_harvard_bioinfo_training