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afq

Automated Fiber Quantification

artdock

Docker container for Babak Ardekani's automatic registration toolbox

ci-cd

CI/CD scripts and builds for MUSC-BRIDGE application development

comprssr

A Python CLI to compress studies into multi-part ZIP files with folder hierarchy preservation

dcmreporter

A Python CLI to analyze integrity of scans in a study

dke

The Diffusional Kurtosis Estimator (DKE) is software for processing Diffusional Kurtosis Imaging (DKI) data

docker-designer

Designer compiled for docker integration

dtractseg

A TractSeg pipeline compatible with PyDesigner outputs

enigmanet

A neural network trained and optimized for discrimination of epileptic subjects and its subclasses from healthy subjects

fbi

Fiber Ball Imaging (FBI) for white matter quantification

fbwm

Fiber ball white matter modeling

m-ama.github.io

MAMA's website

makedt6frompyd

Docker container to convert PyDesigner outputs to AFQ's dt6.mat

mcr-v97

Matlab (C) Runtime for Matlab R2019b (v.9.7) in Docker

mcr-v98

Matlab (C) Runtime for Matlab R2020a (v.9.8) in Docker

mice-roi-processing

Script designed to extract parameters from DKI maps based on ImageJ-drawn ROIs

miqglia

A set of MATLAB scripts for quantification of microglia images acquired through brightfield microscopy.

nii_preprocess

pydesigner

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

tractseg

Automatic White Matter Bundle Segmentation