mtmcgowan Goto Github PK

citrus

Citrus Development Code

crops545_hw4_glm_gwas

Statistical Genomics, Homework 4, an R package that performs GWAS by GLM, includes both covariate, PCA, and PCA cluster effects

cropsci545

Has mtmcgowan's custom functions for CropSci545

cyberthumb

An arduino based houseplant sensor

farmcpu

An unofficial R package that includes FarmCPU functions

gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

ggcall

An R package for calling SNP chip genotypes with Gaussian mixture models

hello-world

github tutorial

hort503

Contains coursework for Hort503: Introduction to Computing for Data Science

kids_guide_to_minecraft_ftb

A simple markdown guide to setting up and starting to use Minecraft FTB

kinc.r

Supplemental R package for KINC

lab5

Demo repo for CropSci545 Lab5

littersim

Simulates progeny phenotypes from parental phenotypes and genetic rules

masterblaster

A SLURM tool for performing parallel BLAST searches

newmannetworks

This project contains R notebook files that work through Mark Newman's Networks 2nd Edition textbook

polysnpclust

An R package for calling polyploid SNP chip data

snakemake-workflow-template

A template for standard compliant snakemake-workflows

statgen_playground

This repository contains a series of Rmarkdown notebooks exploring concepts in statistical genomics

swc-wsu-2017-04-07

Materials for R Carpentry Workshop

test-datasets

Test data to be used for automated testing with the nf-core pipelines

test1

test2

test3

zzlabtest

Test repo for individual report