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ceticsdb

A repository for integration and analysis of low and high-throughput omics data and mathematical models of biochemical reactions.

digital-northern-tool

A Digital Northern tool for agglomerative hierarchical clustering of gene expression data

featsel

An open-source framework for benchmarking of feature selection algorithms and cost functions.

inf0618

Arquivos para a Atividade Prática 3 de INF-0618, segundo semestre de 2023.

mass-conservation-simplification

A program to generate all the systems of DAEs given a set of ODEs and mass conservation algebraic equations

mite

MITE (Matrix of Intensity by Time of Elution)-based, phyloproteomic analyses

motif-hunting

A program to validate an algorithm for acquisition of 4-vertex motifs in weighted interactome maps

mpf2dat

A program to read a Multiple Pattern Feature (MPF) file, discretize it, and save the results into a featsel DAT format file.

multiresolution-nuclear-protein-classifier

redymo

A dynamic model of the replication process in kinetoplastida

rotas

Rotas: a simple route planner system.

sbgn2ode

A set of tools for converting Ordinary Differential Equation (ODE)-based dynamic models from Systems Biology Graphical Notation to ODE systems in LaTeX equations and/or in Julia symbolic expressions.

scientiometer

spgn

A simulator of Probabilistic Gene Networks (PGNs).

teste-autograding-c

Teste de autograding com a linguagem C

w-operator-filter

A set of programs to design and apply W-operator filters on noisy binary images.