mrliuw Goto Github PK

alphafold

Open source code for AlphaFold.

bitacora

BITACORA: A Bioinformatics tool for gene family annotation

cofly

WGCNA code for fly microarray data

complexheatmap

Make Complex Heatmaps

cruk-summer-school-2018

Summer school course materials collection

d-script

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

data-science-study-paths-march-2019

A complete ML study path, focused on TensorFlow and Scikit-Learn

epidope

Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster.

hla-bind

Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction

idep

Integrated Differential Expression and Pathway analysis

mpal-single-cell-2019

Publication Page for MPAL Paper 2019

mrliuw.github.io

my personal page

multi-omics-analysis

Multi-omics analysis protocols by Lyu.

penda

PenDA is a rank-based method for personalized differential analysis.

refnet

rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

rseqr_mod

semanticgo

A functional similarity analysis tool

ssgsea2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

testwebpage

tissuespace

zebrafishwgcna

WGCNA code for zebrafish microarray data