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amplify-vite-react-template

This is a React starter for building a fullstack app with AWS Amplify.

code_edit_distance

This is a basic script that takes in two text files, removes all whitespace, and computes the edit-distance

crux-toolkit

dwm_configuration

This is my DWM configuration

fibonacci

This is project one of PHYS 2200

genericmsa

This is an implementation of Multiple Sequence Alignment, where the "sequences" are grouped; we insert the gaps into all of the sequences in a group. C and Python

ginventory

A small project using google spreadsheets to keep track of my personal food inventory

gradingcriteria

hknorganizing

honorsthesis

horizon-keyboard

hw05

Homework 5 for PHYS 2200

iedb_scraping

This Python code is for scraping data from the IEDB database. It's for another tool I'm making, so it will be fairly limited in use, but I suspect other people might find it useful.

image_fitter

immunogalaxy

A Galaxy pipeline for MS/MS based immunopeptidomics. Uses MSGF+, NetMHC and Percolator.

kmer_hashtable

landlordlistct

latextemplates

latextools

These are some nifty tools for latex. Written in Python.

libmaxminddb

C library for the MaxMind DB file format

likelihood_compare

Little tool for creating a PWM peptides under a certain Q-value threshold, then plotting (with rolling average smoothing) the likelihood as function of rank.

mail_command

match_person_date

This will be a program that matches people to office hour times, given their available schedules.

mhcstabile

ML Project for a class to predict half life of peptide-MHC complexes using statistical potential matrices

mip_epigraph

An implementation of the algorithm described here. It uses Mixed Integer Programming for determining the optimal path through the epitope graph

mrforce.github.io

msgf2pin-ptm-mass-delta

A Version of percolator (really the msgf2pin utility) that outputs PTMs as mass deltas, instead of unimod accession. This is because the most recent release of crux has an old version of percolator that freaks out if you give it unimod PTMs

msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

netmhc_ms_index

nycdb

Database of NYC Housing Data