Li Song's Projects
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Conda recipes for the bioconda channel.
Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
Fast alignment and preprocessing of chromatin profiles
Constraint-based Local Assembly and Selection of Splice variants
A python script that selects a key and columns from csv B and append that to csv file A . Require pandas.
Deep Learning Method to Identify Cancer Associated TCRs - modified to output score for each CDR3
Add color heatmap to seaborn heatmaps
Rigorous benchmarking of HLA callers for RNA seq data
Highly specific clustering of T cell receptor CDR3s
The programs and scripts written during the 2014 summer internship in JCVI
Fast and memory-efficient sequencing error corrector
Lighter's paper
Know more about Shirley Liu lab at
In silico data and tests
About how to submit multitple jobs to slrum
One partial order alignment implementation.
Bioconductor package "polyester", devel version. RNA-seq read simulator.
Add p-value annotation to the plot
Scaffolding with RNA-seq read alignment
The scripts used in rascaf paper
Error correction for Illumina RNA-seq reads
The scripts and commands used in the rcorrector paper
The C++ class for extracting and concatenating segments from sequencing read
SAPPER -- call variance from ChIP-Seq directly
This repo is for demonstration purposes only.