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advise

Workflow and analysis pipeline for the ADVISE project

ascat

ASCAT copy number R package

battenberg

Battenberg R package for subclonal copynumber estimation

cappseq_snv_pipeline

Variant calling workflow for CAPPSeq data

dellingr

Error suppression and variant calling pipeline for libraries prepared using barcoded adapters (Formerly ProDuSe)

dryclean

Irons out wrinkles in noisy coverage data using robust PCA

ffpolish

fragcounter

GC and mappability corrected fragment coverage for paired end whole genome sequencing

g3viz

Lollipop-diagram to interactively visualize genetic mutations

galaxy_tools

A collection of Galaxy tools and workflows for performing cancer genome analyses.

gamblr

Set of standardized functions to operate with genomic data

gamblr.data

Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R

gamblr.helpers

A collection of helper functions to support the functionality of GAMBLR-based packages

gamblr.predict

Collection of functions and helpers to classify B-cell lymphomas

gamblr.results

A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas

gamblr.utils

Collection of functions that consist of the core functionality of GAMBLR

gamblr.viz

Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R

ggsci

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

guidelines

A collection of curated guidelines to enable reproducibility in computational biology

hotmaps

Detects hotspot regions for somatic mutations in 3D protein structures

hrdetect-pipeline

idt_umi_workflow

Workflow for processing CAPPSeq data sequenced using IDT's UMIs

jabba

MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

jars

Read and somatic variant simulator for targetted Illumina sequencing data

kronos_pipelines

Kronos pipelines maintained by the Morin lab

lab_scripts

Consolidated scripts used by the Morin lab

llmpp

Lymphoma Leukemia Molecular Profiling Project

llmpp.viz

R package for simplifying the use of standardized colours in R

llmpp_shiny

Dedicated shiny app for variant review

lofreq

LoFreq Star: Sensitive variant calling from sequencing data