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acl-anthology

Data and software for building the ACL Anthology.

adapter-transformers

Huggingface Transformers + Adapters = ❤️

bio-ner

Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.

biobert-pytorch

PyTorch Implementation of BioBERT

biocreative-vii-track-2-nlm-chem-track-full-text-chemical-identification

datasets

🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools

drugprot-relation-extraction

This repository includes pytorch codes for using domain-specific BERT models, along with proposed const-BERT variants on the Drugprot track of BioCreative VII Challenge.

inception-external-recommender

Get annotation suggestions for the INCEpTION text annotation platform from spaCy, Sentence BERT, scikit-learn and more. Runs as a web-service compatible with the external recommender API of INCEpTION.

kgpool

[ACL 2021] KGPool: Dynamic Knowledge Graph Context Selection for Relation Extraction

mayoclinic-scrapper

Scrapping diseases information from Mayo Clinic and saving it in Neo4j

mtl-bioinformatics-2016

scifive

SciFive: a text-text transformer model for biomedical literature

solvingalmostanythingwithbert

BioBert Pytorch

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

welt

A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.