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cluster

ISODATA clustering in R

encore

An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculating covariance matrices, ensemble similarities, entropy and conducting PCA analyses.

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

model-of-heart-rate-performance

A model with multiple metabolic pathways to describe the performance curves with metabolic depression of marine molluscs.

mxfold2

MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration

rna-editing-from-rnaseq

A shell pipeline for RNA-editing site identification from RNA-seq data only

rnafold-public

Analysis of RNA folding bias (Local Folding Energy) based on randomizations

rnafold-rts-public

Source code for RTS analysis. https://www.biorxiv.org/content/10.1101/2020.02.10.941153v1

spot-rna

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

thermal-adaptation-of-mrna-secondary-structure

toolset

MMTSB Tool Set