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algonauts2021_devkit

Starting code for Algonauts 2021 challenge

ants

Advanced Normalization Tools (ANTs)

awesome-rl

Reinforcement learning resources curated

bayesianmixtures.jl

Julia package for Bayesian mixture models

bootcamp

Caltech Introduction to Programming for the Biological Science Bootcamp

case-studies-python

An introduction to the practicing neuroscientist to data analysis in Python

cellularautomata.jl

Cellular Automata simulation toolkit for Julia

deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

dynamicalsystems.jl

Award winning software library for nonlinear dynamics

electrophysiologydata

A list of openly available datasets in (mostly human) electrophysiology.

hebbff

Meta-learning local synaptic plasticity for continual familiarity detection

lfads-run-manager

Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)

manim

Animation engine for explanatory math videos

matconvnet

MatConvNet: CNNs for MATLAB

models

Models and examples built with TensorFlow

music_and_personality

Scripts used for the analysis in Nave et. al 2017

netrep

Some methods for comparing network representations in deep learning and neuroscience.

neural-data-transformers

nlb_tools

Python tools for participating in Neural Latents Benchmark '21

nsdcode

Code related to analyzing the Natural Scenes Dataset

plotneuralnet

Latex code for making neural networks diagrams

pml-book

"Probabilistic Machine Learning" - a book series by Kevin Murphy

ppseq.jl

Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains

psiturk

An open platform for science on Amazon Mechanical Turk.

pynapple

PYthon Neural Analysis Package :pineapple:

pyprobml

Python code for "Machine learning: a probabilistic perspective" (2nd edition)

pysindy

A package for the sparse identification of nonlinear dynamical systems from data

rsatoolbox

Python library for Representational Similarity Analysis

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib

seqnmf

An algorithm for unsupervised discovery of sequential structure