millerlab-cphg Goto Github PK

cad-analysis

cad_qtl

coronary_snatac

daviddev

this is where david will dev plaqview_ATAC

dockerfile_plaqview

This repo contains the dockerfile(s) to accurately reproduce the environment to analyze plaqview data and develop the plaqview shiny app

drugthatgene

DrugThatGene

fhl5_manuscript

fine_mapping

This repository contains scripts used for fine-mapping GWAS locus using eQTL prioritization methods, including Summary-based Mendelian Randomization (SMR) and coloc based colocalization.

human_athero_scrna_meta

This repo contains scripts used for the Human Atherosclerosis scRNA-seq meta-analysis project.

leafcutter

UVA Miller Lab LeafCutter pipeline

ma_2020

Comprehensive single-cell RNA seq analysis workflow: automatic cell labeling to drug discovery and repurposing. Work from UVA CPHG Miller Lab.

plaqview

This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.

plaqview_atac

Central Repo for the PlaqView single-cell ATAC-seq portal.

plaqview_dataprocessing

This is just the directory and scripts for processing the raw recruited datasets

rna_seq-flow

RNA-Seq Analysis pipeline using Snakemake workflow

scrnautils

This repo contains code for automating processing of scRNA libraries and other useful functions

shinyheatmap

Web application for enormous biological heatmaps

toy_isee_instance

This repo has code to build a small iSEE app for docker image testing purposes.

varid_rsid_converter

varID to rsID converter

verifybam_id

Checks the sample contaminations and the sample swaps