Milad Bastami's Projects
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
CLoMAT: Conditional Logistic Model Association Tests. CLoMAT provides a general solution to control for population stratification by matching cases and controls based on their ancestry background.
📊 Circular and Rectangular Manhattan Plot
A complete computer science study plan to become a software engineer.
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
dbSNP
Tissue and Cancer Type Identification using Deep Neural Networks
Hail helper functions for the gnomAD project and Translational Genomics Group
Reproduce analyses in Harmony Manuscript
Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
Analyses supporting the Medical Genome Reference Bank manuscript
My Research Portfolio on GitHub
Codes for microRNA polymorphism project
Curated list of project-based tutorials
The Rmarkdown version of proteome river
This is a tutorial that is meant to introduce the concept of Docker to new users.
Examples of single-cell genomic analysis accelerated with RAPIDS
A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)
R Graphics Cookbook
:guitar: Rocking R at UMCCR
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary