prefix should use colon not underscore for finishing step about metat_assembly

[kaijli]

All the prefixes should have this substitution applied to them, but I'll go through and check everything.
String prefix=sub(proj_id, ":", "_")

[aclum]

Correct, that is the problem. That substitution should be for file names only. For the prefixes within a file, contig headers, it should use the colon. See some example data from production runs example:

/global/cfs/cdirs/m3408/results/nmdc:omprc-11-fmxcdq73/nmdc:wfmgas-11-had2wk78.1> head -1  nmdc_wfmgas-11-had2wk78.1_contigs.fna
>nmdc:wfmgas-11-had2wk78.1_scf_1_c1

[kaijli]

The prefix variable passed to finish_asm should have a colon and not an underscore

Is this still applicable? the colon will break the finish_asm renaming. there's nothing in finish_asm that needs the colon version

[kaijli]

checked through everything to make sure finish_asm files had the right project id / prefixes 1518334

[aclum]

The way you have it now looks correct. The files are named with an '_' (ie nmdc_wfmgan-12-gbysvd76.1_imgap.info) and the headers within the files have colons ':' (ie nmdc:wfmgan-12-gbysvd76.1_0000001)