Module not found with cron about hampel_filter

[MichaelisTrofficus]

Hi, Have you checked which python distribution you are using in the crontab? Check if the python distro that is executing the job is the same that the one that has hampel installed. El lun, 7 jun 2021 a las 11:49, Lorenzo Pons ***@***.***>) escribió:

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Hi, I installed hampel on my computer and then on a server. It's called by a single python script using import hampel when I run it manually or on a notebook it works perfect, however when it passes through a crontab I get this execution message Traceback (most recent call last): File "/mellisphera/rundata.py", line 13, in <module> import hampel ImportError: No module named 'hampel' the server works with anaconda distribution the module seems properly installed in /opt/mellisphera/anaconda3/lib/python3.7/site-packages and I've given it wide access rights to avoid any issue on that side drwxrwxrwx 2 lorenzo mellisphera 4096 Jun 7 06:14 hampel-0.0.5.dist-info -rwxrwxrwx 1 lorenzo mellisphera 2151 Jun 7 06:14 hampel.py Any idea of why the batch mode cannot resolve this module (it resolves all others)? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHUXW75QS3DFL4AO7RGGL7LTRSIYZANCNFSM46HJF6EA> .

[lzpons]

Thank you for the hint. The crontab is runing on the same user as I was testing on the terminal. But your comment made me think about checking the path and there seems to be the issue.

when runing the script with crontab the PATH is extremely basic.
/usr/bin:/bin
as for when I run it on the terminal it is
/opt/anaconda3/bin:/opt/anaconda3/condabin:/usr/local/bin:/usr/bin:/bin

That seems to be the reason because in /usr/bin there is an old python3.5 distribution that was being launched

Thanks for your help!

[MichaelisTrofficus]

Happy to hear that!! You are welcome! El mar, 8 jun 2021 a las 17:03, Lorenzo Pons ***@***.***>) escribió:

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Closed #2 <#2>. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#2 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AHUXW77UPVEPPFYDVYINFJDTRYWNTANCNFSM46HJF6EA> .