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I'm a Member of the Professional Staff at the California Institute of Technology. I've been a researcher, principal investigator, team leader, international community organizer, open standards creator, open-source software architect, and full-stack software engineer – often all at once!

I enjoy developing software tools to support interdisciplinary research in scientific domains. My research and software contributions to date have spanned systems biology, computational neuroscience, cognitive science, artificial intelligence, data preservation, and library services.

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Michael Hucka's Projects

jupyter-book icon jupyter-book

Build interactive, publication-quality documents from Jupyter Notebooks

libsbml icon libsbml

LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.

ottoman icon ottoman

Manipulate text and metadata in OmniOutliner documents

pangolin-notebook icon pangolin-notebook

A system for creating an online notebook written using Pandoc-flavored Markdown and hosted using GitHub Pages.

pywebio icon pywebio

Write interactive web app in script way.

readmine icon readmine

Example README file demonstrating a suggested README file structure for software projects

rsmirror icon rsmirror

A shell script for mirroring a Mac OS X directory to a remote computer using rsync over ssh.

setuptools icon setuptools

Official project repository for the Setuptools build system

shiv icon shiv

shiv is a command line utility for building fully self contained Python zipapps as outlined in PEP 441, but with all their dependencies included.

somanylanguages icon somanylanguages

A concise and comprehensive list of computer languages used by humans.

sourmash icon sourmash

Compute and compare MinHash signatures for DNA data sets.

taupe icon taupe

Taupe takes a downloaded Twitter archive ZIP file, extracts the URLs corresponding to tweets, retweets, replies, quote tweets, and liked tweets, and outputs the results in a comma-separated values (CSV) format that you can use with other software tools.

tex icon tex

My TeX & LaTeX styles and other files

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