All tests failed about wochenende

[colindaven]

I added the run_test.sh script recently to run the exact test needed. Please try this.

# In the slurm script 

for the first two, see if you can come up with solutions.

# running ngmlr - no tests exist for this aligner
python3 run_Wochenende.py --metagenome testdb --longread --threads $cpus --aligner ngmlr --readType SE --debug --force_restart $fastq
# running minimap2 - no tests exist for this aligner
python3 run_Wochenende.py --metagenome testdb --longread --threads $cpus --aligner minimap2 --readType SE --debug --force_restart $fastq

[colindaven]

The need for a) long reads for testing and b) using long read aligners in the test are covered here : #41