Comments (4)
@joeroe Do you know how to add this functionality? @peekxc is the original author of the HDBSCAN implementation.
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I'm not familiar with the paper mentioned. That being said, it may be possible to post-process the info returned by the internal hdbscan calls to add this. After all, obtaining DBSCAN* clusters amounts to cutting linkage produced by hdbscan via cutree
.
Otherwise, the computeStability
function would have to be forked on the cpp-side, which is a bit involved.
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It's a bit beyond me, to be honest. Since it's a modification to the cluster extraction algorithm, does it have to be in the Cpp code? Here's the PR that added it to Python's hdbscan: scikit-learn-contrib/hdbscan#329. Perhaps @cmalzer or @lmcinnes could help?
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My R is not great, and tracing it into the C++ I lose track a little of exactly what data structures we have, but if I read it tight you should be able to insert code here at the R level to do the epsilon checks and pick different clusters accordingly. There are different data structures in play; I think this is a lot easier if you have the condensed (in this package simplified) tree data structure available -- it isn't clear to me if that's actually exposed at the R level, or if you have to be in the C++.
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Related Issues (20)
- some strange results of sNN function HOT 7
- Discrepancies in outlier score between HDBSCAN R and python HOT 7
- Implement Density-Based Clustering Validation (DBCV) HOT 2
- BD-trees
- DBSCAN with categorica/factor/dummy variables HOT 1
- hdbscan HOT 2
- LOF edge case HOT 2
- LOF fails after upgrading to dbscan 1.1-6 HOT 2
- Possible Memory Leak HOT 2
- kNN crashing (segfault) when matrix has Inf values HOT 1
- mrdist error in large datasets HOT 3
- frNN object created from scratch couldn't be used in dbscan HOT 6
- Error in mrd(x_dist, coredist) : number of mutual reachability distance values and size of the distances do not agree. HOT 6
- DBSCAN for trajectories HOT 4
- Getting an error when using predict: x has to be a numeric matrix. HOT 2
- may you clarify is multi-density clustering is implemented, since it is mentioned on references ? HOT 1
- R session aborted in pointdensity() HOT 4
- Add broom tidier methods HOT 3
- `hdbscan` documenting params that are not used
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