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041323_rbenjamin_gigaassay

ampliconseq_qiime2

QIMME2 Metagenomics Amplicon Sequencing Pipeline

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

gcp-env-scripts

bash scripts to create gcp environment

gcp-scripts

Basic utilities

gcp-wiki

Repo for NIBSC GCP wiki

isoseq3.sarscov2

nextflow pipeline processing viral long reads

metagenomics_mpa3

microbiome_rr_workflow

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

msc_project

Transcriptome and targetome analysis of miR-17-92 expressing cells using RNA-seq

nf-core-bagobugs

Nextflow DSL2 Metagenomics Analysis Pipeline for Shotgun Sequencing Data

nf-core-buggybarcodes

random_scripts

Basic scripts for standard bioinformatic tasks

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

test-datasets

Test data to be used for automated testing with the nf-core pipelines

thesis

tools

Python package with helper tools for the nf-core community.

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples