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bambi

A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB

bcviz

JavaScript visualisation for bamcheck file format

dalliance

Interactive web-based genome browser.

disposable-irods

Scripts to create a minimal, disposable IRODS as a test platform

elgiz

Draft assembly visualization

express-4.x-facebook-example

Express 4.x app using Passport for authentication with Facebook.

genotyping

Components of the WTSI genotype analysis pipeline.

htsnexus

Experimental web service for accessing and slicing bam/cram/vcf.bgzip/bcf data

illumina2bam

it-cert-automation-practice

Google IT Automation with Python Professional Certificate - Practice files

js_openid_connect

lmu_tests

ml-warehouse-python

ml_warehouse

Perl DBIx binding to a warehouse housing data from multiple LIM systems

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

npg-irods-python

Applications for the management of data and metadata in iRODS

npg_conda

NPG Conda recipes and tools

npg_docker

Summer Placement Project @ Wellcome Trust Sanger Instute, Hinxton

npg_id_generation

npg_irods

Tools for managing HTS (BAM and CRAM) format files in iRODS.

npg_langqc

npg_ml_warehouse

Loading analysis results into the multi-lims warehouse, see ml_warehouse project for the warehouse details.

npg_porch

npg_porch_cli

A command-line client to enable communication with the npg_porch API.

npg_qc

QC checks and metrics for Illumina NGS data

npg_qc_utils

C programs extracted from npg_qc

npg_ranger

Streaming NGS data (sam, bam, cram) - proof of concept

npg_sentry

npg_seq_common

Utilities for handling NGS data

npg_sequencescape_warehouse

Old sequencescape warehouse: DBIx binding, loader, LIMs driver for st::api::lims