This is the repository for the MG-RAST metagenome analysis system. Take a look at MG-RAST.
Don't try this at home.
MG-RAST is made available under a BSD type LICENSE, see the LICENSE file for details.
server at http://www.mg-rast.org, we are not resourced to help with local installations. So as much as we'd like to we can't help with local installations of this software.
Hardware
MG-RAST is a pipeline, an archive, a complex web interface and several other tools. The entire systems was designed for a Linux/Unix system. We run it on a dedicated small cluster for the server infrastructure and heavily utilize CLOUD computing resources.
Systems-Software
- MySQL
- Cassandra
- Perl
- Python
- R
- Apache
- NGINX
For the bioinformatics software and databases used in MG-RAST please see our manual: http://help.mg-rast.org
type make
Build image and push to dockerhub:
git clone https://github.com/MG-RAST/MG-RAST.git
cd MG-RAST
docker build -t mgrast/api-server:dev .
docker push mgrast/api-server:dev
Get config: (private mcs git repo, for details see fleet unit)
if cd /home/core/mgrast-config; then git pull; else cd /home/core/ ; git clone [email protected]:mgrast-config.git ; fiDownload data
docker run -t -i --name api -v /media/ephemeral/api-server-data:/m5nr mgrast/api /MG-RAST/bin/download_m5nr_blast.sh
docker rm apiStart container:
docker run -t -i --name api -v /home/core/mgrast-config/services/api-server:/api-server-conf -v /media/ephemeral/api-server-data:/m5nr -p 80:80 mgrast/api-server /usr/local/apache2/bin/httpd -DFOREGROUND -f /MG-RAST/conf/httpd.conf
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