Comments (2)
Thanks for capturing this @kylebaron do you think we should move this to an internal Metworx ticket, or do you think it's worth looking into whether the way bbr
is submitting models is playing into this?
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I think this part is relevant to the way that bbr is doing it; you can get some really skewed run times so I think this batching strategy will have problems sooner than later
This set was appropriately scaled, but new jobs can get scheduled until every run of previous batch finishes
Not terrible for this example that runs fast and is easy; this won't work when you get a much more complicated model and the variability in run time is large, with some runs taking very long to finish
internal:~$ qstat -f |grep amd; qstat |grep -c Run
[email protected] BIP 0/0/16 5.35 lx-amd64
[email protected] BIP 0/0/16 5.45 lx-amd64
[email protected] BIP 0/0/16 5.44 lx-amd64
[email protected] BIP 0/0/16 6.06 lx-amd64
[email protected] BIP 0/0/16 5.71 lx-amd64
[email protected] BIP 0/1/16 5.60 lx-amd64
[email protected] BIP 0/1/16 5.29 lx-amd64
2
from bbr.
Related Issues (20)
- config_log error when model run with multiple NONMEM versions HOT 5
- param_estimates and initial_estimates use different names for THETA records HOT 2
- `model_summary` bug when called via `summary_log()` HOT 4
- Bootstrap: revisit how we sample the input data HOT 3
- dOFV and AIC columns for summary_log() HOT 1
- Bootstrap: mechanism to only include data that entered the original problem HOT 1
- Bootstrap: function adjustments needed HOT 4
- Address deprecated warning in function `check_grd`
- Bootstrap runs should inherit attached bbi_args HOT 1
- inherit_param_estimates: revisit rounding and use matrix-handling PR HOT 1
- check_nonmem_finished and get_model_status refactor: improve wait times & change functionality HOT 9
- WK files created by bbr - delete by default? HOT 7
- Consider fail-safe for checking on terminated models HOT 4
- bbi package installation failed HOT 8
- Option to start bootstrap runs at final estimates from parent run HOT 3
- No error or warning when trying to overwrite run when `.wait = FALSE` HOT 15
- Re-name msf file in bootstrap run control stream HOT 1
- Bootstrap batch submission sometimes chokes when called before setup is done HOT 2
- Revisit `check_up_to_date` for `nmboot` models HOT 1
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