Comments (2)
This may be our savior:
http://blog.theseed.org/servers/installation/distribution-of-the-seed-server-packages.html
Someone should install it and test it on the terminal to see what kinds of outputs we get form it, whether and to what extend we can use it to assign taxonomy, etc.
from anvio.
we did find something else.
from anvio.
Related Issues (20)
- [FEATURE REQUEST] Using a list of gene callers id with anvi-export-functions
- [BUG] anvi-split need `variability_splits` in profile.db HOT 11
- [BUG] Different results when running samples together vs separate HOT 3
- [BUG] pulp v2.8 made API changes that cause errors generating workflow DAG diagrams HOT 1
- [BUG] Can't create phylogenomic tree, as phylogenomic-tree.txt and default collection has different number of items.
- [BUG] Can't create phylogenomic tree, as phylogenomic-tree.txt and default collection has different number of items. HOT 3
- [BUG] Can't visualise the pangenome with average nucleotide identity HOT 1
- [BUG] anvi-setup-scgs-taxonomy STILL writes SCGs database to default location HOT 2
- [FEATURE REQUEST] add parameter --temp for temporary files path HOT 5
- [FEATURE REQUEST] Refactoring Anvio to be more eukaryote friendly/account for different genetic architectures
- [FEATURE REQUEST] Different gene caller option(s) for `anvi-gen-contigs-database` HOT 5
- [FEATURE REQUEST] See external/third-party dependencies on program documentation pages HOT 1
- [FEATURE REQUEST] Adding a program to annotate viral PHROGs via their HMMs HOT 1
- [FEATURE REQUEST] A shortcut for importing layer orders that doesn't go through `anvi-import-misc-data`
- [FEATURE REQUEST] Environment variables for KEGG, Pfam, and other data directories so sys admins can set a global --xxxx-data-dir value
- [FEATURE REQUEST] Annotate which KOfams were added by our bitscore relaxation heuristic
- [FEATURE REQUEST] A conda package for anvi'o with a minimal installation option HOT 1
- [BUG] `--prodigal-single-mode` breaks metagenomic workflow HOT 5
- [BUG] anvio-cluster-contigs fails with Generate input data
- [BUG] anvi-meta-pan-genome does not allow me to use gene calls not from prodigal HOT 10
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from anvio.