Name: Medicines Discovery Catapult
Type: Organization
Bio: Multidisciplinary expertise in Bioinformatics, Cheminformatics, Bioimaging informatics, Machine Learning, Natural Language Processing and Software Engineering
Blog: https://md.catapult.org.uk/our-capabilities/informatics/
Medicines Discovery Catapult's Projects
Lots and lots of LLM agent and RAG demos using crew-ai, langchain & llama-index.
Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.
Coordinating repository allowing users to run the bio-aurac application.
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Go API complementing the COSHH UI web app
Angular web app for tracking the locations and expiry dates of laboratory chemicals
Companion code to the paper "Extracting Scientific Figures with Distantly Supervised Neural Networks" 🤖
Open source annotation tool for machine learning practitioners.
Common utilities and components used by the document library
Part of the Document Library micro service ecosystem. Converts PDFs and other document types to raw text. Uses Apache Tika.
Web service to recognise entities in html using a redis based dictionary
Code versioning and other continuous integration helpers for Gitlab CI/CD pipelines
Bundle your Astilectron app with ease
Web service for cropping .ome.tiff files and combining .tiff files into a single pyramid .ome.tiff file
Python library for reading and writing image data
Wrapper to access InChI from Java
Utility to scan and parse files by format and convert them into json output that can be ingested by mongoimport, Currently supports parsing of json and xml formats
Tool to create images and configuration files for Minerva-Story
MDC clone of openseadragon
Webservice to convert PDFs to HTML
Given a scholarly PDF, extract figures, tables, captions, and section titles.
A Scala based microservice that fetches and processes remote files. Part of the Document Library eco-system
Python lib that allows environment variables to override hocon style yaml or json config
Wrapper for pymongo to allow simple instantiation of MongoDB from configuration.
Methods to simplify configuring and connecting to Postgresql databases
Module to abstract queues. Currently implements RabbitMQ.
Utility methods to help work with lists & dicts
Send notifications to the staff when predefined conditions are triggered
Scala web service for identifying terms within text and resolving them to a value