mclark58 Goto Github PK
Name: Mikayla Clark
Type: User
Location: Oak Ridge, Tennessee
Mikayla Clark's Projects
arast_sdk
coexpression
domainannotation
SDK port of KBase GeneFamilies service
fastani
FastANI wrapper for the KBase SDK
fba_tools
A suite of metabolic modeling tools created using the KBase SDK
featuresetutils
featurevalues
genomecomparison
This module contains the code for some comparative genomics functions in KBase.
genomeproteomecomparison
kb_assembly_compare
kb_ballgown
http://bioconductor.org/packages/release/bioc/html/ballgown.html
kb_blast
BLAST+ implementation for KBase
kb_bowtie2
kb_cufflinks
Wrapper for cufflinks package
kb_cummerbund
kb_cutadapt
KBase wrapper for the cutadapt tool
kb_deseq
Module for running the DESeq2 application (https://www.bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html)
kb_ea_utils
kb_fastqc
kb_fasttree
kb_functional_enrichment_1
kb_fungalmodeling
kb_gblocks
kb_hisat2
Module for running the HISAT2 application (http://ccb.jhu.edu/software/hisat2/index.shtml)
kb_hmmer
kb_idba
IDBA Wrapper
kb_kaiju
kb_masurca
This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)
kb_maxbin
kbase-gottcha2
GOTTCHA2 KBase app
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