mberacochea Goto Github PK

autodocstring

vscode extension that generates docstrings for python files

bac-genomics-scripts

Collection of scripts for bacterial genomics

barrnap

Bacterial ribosomal RNA predictor

bio-cwl-tools

bioconda-recipes

Conda recipes for the bioconda channel.

bioscripts

Some simple scripts

cloud-toolkit

Terraform configuration to deploy nfs server on cloud infrastructures

conway-gol-ts

Conway's Game of Life in Typescript

csharp-sparkpost

SparkPost client library for the C# Programming Language

cwl-format

A very opinionated code formatter for CWL

cwltest

Framework for testing CWL tools and workflows

cwltool

Common Workflow Language reference implementation

django-debug-toolbar-mongo

MongoDB panel for the Django Debug Toolbar

django-rest-framework-json-api

JSON API support for Django REST Framework

dotkmer

A simple kmer counter in dotNet core - a toy project

ebi-metagenomics-webkit-example

A simple (really simple) use case of the ebi-metagenomics-webkit

emacs-config

My personal init.el setup

flowgramfixer

FlowgramFixer is a base calling utility for IonTorrent SFF files

mag

Assembly and binning of metagenomes

mag_snakemake_wf

Recovery of prokaryotic genomes from shotgun metagenomic sequencing data

metagoflow

This repository contains all CWL descriptions of the MGnify pipeline version 5.0 and their implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project

microbetag

microbetag attempts to be a microbial interactions co-occurrence network annotator

mjobs

just like bjobs but a bit nicer

nf-core-tools

Python package with helper tools for the nf-core community.

nf-prov

nf-validation-simple-showcase

pollux

readfq

Fast multi-line FASTA/Q reader in several programming languages

seqtk

Toolkit for processing sequences in FASTA/Q formats

sorghum-bicolor-m81e-16s

Supplementary Material of the paper: The structure and the composition of the sweet sorghum (Sorghum bicolor) bacterial endophytic bacteriales community is affected by chemical N-fertilization in the field - NGS analysis scripts