mbdoud Goto Github PK
Name: Mike Doud
Type: User
Company: UC San Diego
Location: San Diego, CA
Mike Doud's Projects
2016_wsn_ha_analysis
Computer code for the analyses presented in "Accurate Measurement of the Effects of All Amino-Acid Mutations on Influenza Hemagglutinin" (Viruses 2016, 8(6), 155; doi:10.3390/v8060155)
compare-np-preferences
Computer code for the analyses presented in "Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs" (Mol Biol Evol (2015) 32 (11): 2944-2960. DOI: https://doi.org/10.1093/molbev/msv167)
mutational_antigenic_profiling
Computer code for the analyses presented in "Complete mapping of viral escape from neutralizing antibodies" (PLoS Pathog. 2017 Mar 13;13(3):e1006271. doi: 10.1371/journal.ppat.1006271)
shifting-fitness-landscapes
Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda’s fitness landscape and enables speciation
vaccinechecker
RShiny app checks for common ingredients between vaccines
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