Name: Matthew Mosior
Type: User
Bio: Graduate of Bioinformatics and Computational Biology Program at SLU. I enjoy elucidating and applying algorithms and any thought provoking programming.
Location: Tampa, Florida, USA
Matthew Mosior's Projects
Sample code for CSCI 5030 at Saint Louis University
Source code for AoC 2016 programming puzzles
Source code for AoC 2017 programming puzzles.
Advent of Code 2017 using Koka lang.
Agda is a dependently typed programming language / interactive theorem prover.
A base library for Agda for regular programming
The Agda standard library
Compiling Agda code to readable Haskell
count DNA sequence reads in BAM files
A Haskell script that performs basic filtration, using a filtration string, on somatic variant data.
Dockerfile for using bvf.hs.
A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
Dockerfile for using bvp.hs.
A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.
Command-line toolkit for genomic datasets.
Conda recipes for the bioconda channel.
CWL workflows for bioinformatic analysis
C++, Java, Python, and Haskell source code for solving Bioinformatics related problems.
A declarative Unix terminal UI programming library written in Haskell
A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
Tools for selecting targets for and designing panel for various assays
A stream-based runtime-verification framework for generating hard real-time C code.
Simple CSV parser in Idris2
A bioinformatics tool for analyzing somatic hypermutation