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alphafold

Open source code for AlphaFold to extract protein embeddings

biocograph

A tool capable of parsing datasets of papers from pubmed, annotating entities that appear using bio-BERT, creating a network of cooccurrences on which to perform analysis with various algorithms

bioembedding

crowd_evacuation

dnabert

embeddings_reproduction

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

exams

Collection of oral questions and exam material

fhuffman

Parallel implementation of Huffman compression Code using native C++ threads and FastFlow library for runtime support

file_storage_server

A high concurrent client/server architecture for storing files in main memory managed as a cache

ispr

network_stats

A simple client/server ping-pong application working on UDP that measures some basic network statistics

prose

Multi-task and masked language model-based protein sequence embedding models.

winsome

A reWardINg SOcial Media