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all-hail-sage

A few useful function definitions for http://sagemath.org/.

alnvu

Reformat and condense multiple sequence alignments to highlight variability

altair

Declarative statistical visualization library for Python

astronaut-requests

Demo repository combining Conda, Docker, and Travis

auspice

Web app for visualizing pathogen evolution

babble

baby-name-big-data

beagle-lib

general purpose library for evaluating the likelihood of sequence evolution on trees

blackjax

BlackJAX is a sampling library designed for ease of use, speed and modularity.

bpp-phyl

Bio++ Phylogenetic Library

bppsuite

Bio++ Program Suite

chefinator

Expedition menu planning

compare_selection_models_2019

constnj

Code to accompany "constNJ: an Algorithm to Reconstruct Sets of Phylogenetic Trees Satisfying Pairwise Topological Constraints"

cowsay-build-env

Docker environment for building software requiring cowsay

cowsay-test

cozy-demo

A demonstration setup showing a comfortable shell configuration

discourse

A platform for community discussion. Free, open, simple.

docker-logitechmediaserver

Docker image for Logitech Media Server (Squeezebox, Slim)

docs

Wercker docs

dummy-project

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

evo2013index

A program, organized by topic, for the Evolution 2013 meeting. Made by a very hacky shell script.

for-dms-viz

ggplot

ggplot for python

gohellohmsbeagle

The 'hello.cpp' example in the libhmsbeagle repository, translated to Go.

ham

The fantabulous HMM compiler

igh-evaluation

Datasets and results to evaluate methods for analysing immunoglobulin sequences

iqtree2

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more