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2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

bnem

Boolean Nested Effect Models - https://doi.org/10.1093/bioinformatics/btv680 - https://bioconductor.org/packages/bnem

dawnrank

driver gene identification algorithm DawnRank 2014

dce

Finding the causality in biological pathways

electron-quick-start

Clone to try a simple Electron app

epinem

Epistatic Nested Effects Models - https://doi.org/10.1371/journal.pcbi.1005496 - https://bioconductor.org/packages/epiNEM/

g2p-recco_analysis

map_118

Mutational anitgenic profiling of 1-18

martinfxp.github.io

mc-cbn

MC-CBN performs large-scale inference on conjunctive Bayesian networks

mlr3book

mlr3 manual

mnem

Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem

mnemia

mnempp

C++ implementation of the R/Bioconductor package mnem

mnempy

Python implementation of the R/Bioconductor package mnem

nempi

Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi

rcppfun

Helper function implemented with Rcpp.

rnaiutilities

A collection of python tools for processing image-based RNAi screens.

serum_analysis

shinyproxy-docker-compose-example

An example to set up a docker compose for ShinyProxy

slidr

An R package for identification of synthetic lethal partners for mutations from large perturbation screens.

snappy

SNAPPy is a Snakemake pipeline for HIV-1 subtyping by phylogenetic pairing.

split-seq-pipeline

sync-async-callr

A simple Shiny app to demonstrate asynchronous background execution in Shiny