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20191130_anu

2019organizationaldocs

notes and documents for 2019 Workshop

2019workshop

Files related to 2019 workshop

3d_gm_misc

Miscellaneous scripts to deal with 3D landmark data and rendered volumes

awesome-r

A curated list of awesome R frameworks, packages and software.

bh_exercise2-1

bhlab_exercise1

A short exercise to clone this repo and modify the file locally

cape

deeplearningbasedsegmentationforbiologists

3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images

drishti

Drishti

emmliv2

ggnetworx

phylogenetic networks using ggplot2 and ggtree

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

jumping-toads

This repository contains the R code for the paper: Hudson CM, Vidal-García M, Murray TG, Shine R. 2020 The accelerating anuran: evolution of locomotor performance in cane toads ( Rhinella marina, Bufonidae) at an invasion front. Proc. R. Soc. B 20201964. http://dx.doi.org/10.1098/rspb.2020.1964

landmark-free-deformetrica

landmarking

Repository for registration-based landmarking and shape optimization.

mantis-evol

This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B

mesh_process

An R tool for batch-processing of meshes and landmark files for shape analyses

morpho.tools.gm

A set of functions to help with geometric morphometric analyses of 3D data

oculudentavis_retrodeformation

Retrodeformation code for the paper Bolet, A., Stanley, E., Daza, J.D., Arias, J.S., Čerňanský, A., Vidal-García, M., Bauer, A.M., Bevitt, J.J., Peretti, A., Evans, S.E., (2021) Unusual morphology in the mid-Cretaceous lizard Oculudentavis. Current Biology. https://bit.ly/3eaZcVL

phangorn

Phylogenetic analysis in R

practical-machine-learning-with-python

Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.

python_intro_anu

python notebooks and example data for bioinformatics-bash-python course run for RSB at ANU

r-raster-vector-geospatial

Data Carpentry: Introduction to Geospatial Raster and Vector Data with R

raukr

Jenny Bryan's instruction at RaukR: Advanced R for Bioinformatics Summer School

shaperotator

an R tool for standardised rigid rotations of articulated Three-Dimensional structures with application for geometric morphometrics

symmetry

This R Tool Detects Object Symmetry And Plots Estimated Paired Landmarks

tanggle

phylogenetic networks using ggplot2 and ggtree

ubuntu-rstudio-server-setup

Here's a bash script that'll get Rstudio server (preview 1.3) setup with Microsoft open R 3.5 under the hood.

voxelstats

A MATLAB package for multi-modal voxel-wise brain image analysis