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basespace-invaders

A collection of tools to work with Illumina's basespace

bcbb

Useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bestpracticesworkshop

Repository for the workshop "Best practices on development"

bioluigi

Pipeline framework for biological analyses based on luigi

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

config

Various config files I don't want to re-type

cutadapt

cutadapt removes adapter sequences from sequencing reads

de_novo_scilife

deap

Distributed Evolutionary Algorithms in Python

dotfiles

frc_align

Computes FRC from SAM/BAM file and not from afg files

genologics

Python interface to the GenoLogics LIMS server via its REST API.

ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

lic

mario_scripts

mirna_processing

Scripts to process miRNA from trimming through annotation.

modules.sf.net

Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)

ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

ngs.test.data

Test data set generation for ngs

pyconsweden2015

Material for PyCon Sweden 2015 proposal/presentation

radseq

Scripts and wrappers for radtags code to deal with SciLifeLab directory structures.

scilifelab

Misc code snippets for Science For Life Laboratory

specfiles

rpm specfiles used for building packages in use at SciLifeLab

spruce_genome_project

Set of tools to assist spurce2.0 project