marbl Goto Github PK
Name: MarBL
Type: Organization
Bio: Maryland Bioinformatics Labs
Name: MarBL
Type: Organization
Bio: Maryland Bioinformatics Labs
outlier detection in BLAST hits
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
A single molecule sequence assembler for genomes large and small.
Regression test cases and results for Canu.
The complete sequence of a human genome
CHM13 human reference genome issue tracking
A complete diploid human genome
HG002 human reference genome issue tracking and polishing
Interactively explore metagenomes and more from a web browser.
Associated materials for the Mid-Atlantic Microbiome Meet-up (M3)
Fast genome and metagenome distance estimation using MinHash
A fast approximate aligner for long DNA sequences
k-mer based assembly evaluation
A genomic k-mer counter (and sequence utility) with nice features.
A collection of miscellaneous code used by Meryl, Canu and others.
MetaCarvel: A scaffolder for metagenomes
MetaCompass: Reference-guided Assembly of Metagenomes
Visualization tool for (meta)genome assembly graphs
A metagenomic and isolate assembly and analysis pipeline built with AMOS
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
MUMmer3
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Complete assemblies of non-human primate genomes
Extracting paths from assembly graphs
SALSA: A tool to scaffold long read assemblies with Hi-C data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.