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Manuel Peris's Projects

aa2atom icon aa2atom

Change amino-acidic sequence into counts of atoms: a simple python module.

chempy icon chempy

⚗ A package useful for chemistry written in Python

clipsms icon clipsms

Comprehensive Localization of Internal Protein Sequences

collidoscope icon collidoscope

Collidoscope trajectory method collisional cross section modeling program

comet icon comet

An tandem mass spectrometry (MS/MS) sequence database search tool.

decontools icon decontools

Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

envemind icon envemind

An algorithm for monoisotopic mass prediction for high-resolution mass spectra.

fragariyo icon fragariyo

Python3 Scripts to peak match terminal and internal fragments with some data analysis tools included. Disulfide bonds are considered when creating theoretical database.

fragquaxi icon fragquaxi

Glycoform Quantification via XIC Integration

glyco-decipher icon glyco-decipher

A software tool for the sensitive interpretation of LC-MS/MS spectra of intact N-glycopeptides with the discovery of unusual modified glycans.

glyco-peptidome icon glyco-peptidome

Monitoring β-casein phosphorylation and O-glycosylation over lactation reveals distinct differences between the proteome and endogenous peptidome

glycresoft icon glycresoft

An LC-MS/MS glycan and glycopeptide search engine

glypy icon glypy

Glycan Analysis and Glycoinformatics Library for Python

grppr icon grppr

Grouper - software for general 2D isotopic grouping. Can be applied to LC-MS (liquid chromatography) or IM-MS (ion mobility) datasets.

ifams icon ifams

iFAMS, or interactive Fourier Analysis for mass spectra, is the Prell lab's home built deconvolution algorithm for heterogenous mass populations

isospec icon isospec

Libraries for fine isotopic structure calculator.

lacytools icon lacytools

A high-throughput data extraction package for LC-MS data.

mainzer icon mainzer

An algorithm for intensity annotation in top-down mass spectrometry.

matchms icon matchms

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

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