Error creating environment from YML file about mamba

[wolfv]

i need to do a release, sry!

[wolfv]

Indeed there is a bug that I just fixed.

[wolfv]

those two bugs are now fixed (also I've added travis so we don't run into this again in the future).

[telatin]

Thanks for the fix. I tried conda update mamba, i still get:

 >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/ubuntu/miniconda3/lib/python3.6/site-packages/conda/exceptions.py", line 1003, in __call__
        return func(*args, **kwargs)
      File "/home/ubuntu/miniconda3/lib/python3.6/site-packages/conda_env/cli/main.py", line 73, in do_call
        exit_code = getattr(module, func_name)(args, parser)
      File "/home/ubuntu/miniconda3/lib/python3.6/site-packages/conda_env/cli/main_create.py", line 101, in execute
        installer.install(prefix, pkg_specs, args, env)
      File "/home/ubuntu/miniconda3/lib/python3.6/site-packages/mamba/mamba_env.py", line 59, in mamba_install
        mamba_solve_specs, False, False)
    TypeError: solve(): incompatible function arguments. The following argument types are supported:
        1. (arg0: List[Tuple[str, str, int]], arg1: str, arg2: List[str], arg3: List[Tuple[int, int]], arg4: int, arg5: bool, arg6: bool) -> Tuple[List[Tuple[str, str, str]], List[Tuple[str, str]]]
etc

To be fair I'm not sure I'm getting the right update: if mamba --version returns conda 4.6.14, is it the right way to check Mamba's version?

[mdehollander]

Same error here using conda 0.07 installed with conda:

$ conda list | grep mamba
mamba                     0.0.7            py37hc9558a2_1    conda-forge

[xyu]

Any timeline for pushing another release to conda-forge with 5ff168d?

[mdehollander]

Using the compiled version from master I still get an error installing the qiime software:

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "~/.conda/envs/mamba/lib/python3.7/site-packages/conda/exceptions.py", line 1003, in __call__
        return func(*args, **kwargs)
      File "~/.conda/envs/mamba/lib/python3.7/site-packages/conda_env/cli/main.py", line 73, in do_call
        exit_code = getattr(module, func_name)(args, parser)
      File "~/.conda/envs/mamba/lib/python3.7/site-packages/conda_env/cli/main_create.py", line 101, in execute
        installer.install(prefix, pkg_specs, args, env)
      File "~/.conda/envs/mamba/lib/python3.7/site-packages/mamba/mamba_env.py", line 88, in mamba_install
        rec = to_package_record_from_subjson(sdir, pkg, jsn_s)
      File "~/.conda/envs/mamba/lib/python3.7/site-packages/mamba/utils.py", line 54, in to_package_record_from_subjson
        info = json.loads(jsn_string)
      File "~/.conda/envs/mamba/lib/python3.7/json/__init__.py", line 348, in loads
        return _default_decoder.decode(s)
      File "~/.conda/envs/mamba/lib/python3.7/json/decoder.py", line 337, in decode
        obj, end = self.raw_decode(s, idx=_w(s, 0).end())
      File "~/.conda/envs/mamba/lib/python3.7/json/decoder.py", line 353, in raw_decode
        obj, end = self.scan_once(s, idx)
    json.decoder.JSONDecodeError: Unterminated string starting at: line 1 column 200 (char 199)

[wolfv]

hi @mdehollander thanks for checking. there seems to be another bug! I am looking into it.

[wolfv]

https://travis-ci.com/wolfv/mamba

[mdehollander]

Great! It works for me now. Thanks.