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Monther Alhamdoosh's Projects

abseqpy icon abseqpy

AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqPy is one of its packages.

abseqr icon abseqr

AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages.

bioinflatexstyles icon bioinflatexstyles

Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals

deepipw icon deepipw

Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nature Machine Intelligence).

dnne icon dnne

MATLAB Library for DNNE Algorithm

egsea icon egsea

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

egseadata icon egseadata

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

gmoviz icon gmoviz

Seamless visualization of complex genomic variations in GMOs and edited cell lines

ngstools icon ngstools

Next-Generation Sequencing(NGS) toolkits.

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