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Name: Marc-André Lemay
Type: User
Bio: Research assistant at Université du Québec en Abitibi-Témiscamingue, Amos, Québec, Canada
Marc-André Lemay's Projects
advent_of_code_2023
My solutions to Advent of code 2023 challenges
breakpoint_refinement
Refinement of structural variants using Oxford Nanopore sequencing data
chess
Object-oriented Python chess program
delgbs
Detection of deletions and duplications from GBS data
formation_grid
Formation sur le package grid de R
gwask
Utilities to work with GWAS results from GAPIT and k-mers GWAS
haplotypeminer
Gene-centered haplotyping from SNP data
katcher
Extract aligned reads containing a set of k-mers
kmers_ld
Compute pairwise LD from presence/absence of k-mers
phd_second_chapter
Config files for my GitHub profile.
soybean_kmer_gwas
Code used for "k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean"
soybean_sv_paper
Structural variation analysis in soybean using Oxford Nanopore and Illumina sequencing data
sveval
Functions to compare a SV call sets against a truth set.
svmu
A program to call variants from genome alignment
svmutools
Processing the output of svmu and converting it to VCF format
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