the folder structure of dataset about survpath

[ajv012]

Hello,

Thanks for your interest in our work and apologies for the slow response.

All of the metadata related to transcriptomics is found in datasets_csv/metadata/. We use pathway compositions from 2 data sources, Reactome and MSigDB. The pathways that we selected to include (based on what transcriptomic data we had available from TCGA), can be found in datasets_csv/metadata/*_signatures.csv. Here hallmarks_signatures.csv are from MSigDB, xena_signatures.csv are from Reactome, and combine_signatures.csv are combining those two sources. For each disease model from the TCGA, we also provide the raw RNAseq for the genes that are used in the pathway analysis.

I hope this helps in answering your question. Feel free to ask any more questions regarding the data, model, or results.