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aws-ec2-ssh

Manage AWS EC2 SSH access with IAM

bedtools2

A powerful toolset for genome arithmetic.

civ2.pm

Perl module and scripts for interacting with Civilization 2 savegames

epic

excel-writer-xlsx

Perl module to create Excel XLSX files.

mhcfovea

nextflow

A DSL for data-driven computational pipelines

nextflow-vim

Nextflow plugin for VIM

nf-test

Simple test framework for Nextflow pipelines

optitype

Precision HLA typing from next-generation sequencing data

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

scalpel-shareddeps

A fork of the scalpel variant caller that uses shared (rather than static) dependencies.

seqtk

Toolkit for processing sequences in FASTA/Q formats

strict

Make R a little bit stricter

term-progressbar

varscan_accessories

vcf2tsv

Conversion of VCF data to tab-separated values (TSV)