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baidupcs-web

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

calcium-imaging-analysis

User-friendly software for motion-correcting calcium imaging videos, automatically finding ROIs using the CNMF method and manually refining them.

calciumsignalextract

Extract regions of interest based on correlated pixel intensity

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

ezcalcium

Calcium Data Extraction and Analysis

hello-world

firist try

labelstorois

A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

npmk

Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).

omnipose

Omnipose: a high-precision solution for morphology-independent cell segmentation

orgamapper

ImageJ plugin for detecting and mapping organelles within a cell

ringintensitydistribution

This macro divides the cell into rings of identical area that converge towards the nucleus center. The intensity density of the interest signal is then measured per ring and normalized to the total intensity density of the cell.

samj-ij

An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.

zerocostdl4mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy