longbow0 Goto Github PK

500lines

500 Lines or Less

aegis

Analysis of Epistasis & Genomic Interacting Sites

ancestralsequencerescue

A small utility to rescue reconstructed ancestral sequences from BEAST analyses

bioperl.github.io

The BioPerl Web site

bioutils

Routine utilities for seuqnece operation

bmodeltest

Bayesian model test package for BEAST 2

books

【编程随想】收藏的电子书清单（多个学科，含下载链接）

burntrees

Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bypy

Python client for Baidu Yun (Personal Cloud Storage) 百度云/百度网盘Python客户端

codonshuffle

command-line-text-processing

:zap: From finding text to search and replace, from sorting to beautifying text and more :art:

coursera-dl

Script for downloading Coursera.org videos and naming them.

coursera_rprog_013

Repository for Coursera R programming

cpbias

cwl

From https://bitbucket.org/CRSwDev/cwl/src/master/

diamond

Accelerated BLAST compatible local sequence aligner.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

flux

Integrating influenza antigenic dynamics with molecular evolution

fmpi

树莓派 FM发射台+网络点歌

geocoord

**各省市经纬度

geojson-regions

A repo to create simplified GeoJSON regions so we can display map-based visualisations without having to load tiles all over the place.

ggplot2-translation

ggplot2一书中文翻译的项目文件

graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html

influenza-global-reassortment

Jupyter notebooks and data - reproducible analysis from reassortment paper

influenza-reassortment-detector

Scripts for running the influenza reassortment detector

influenza_h3n2_passaging

Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)

jobtree

Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)

kms-server

a docker image for kms

lantern

:zap: Open Internet for everyone. Lantern is a free desktop application that delivers fast, reliable and secure access to the open Internet for users in censored regions. It uses a variety of techniques to stay unblocked, including P2P and domain fronting. Lantern relies on users in uncensored regions acting as access points to the open Internet.