Comments (3)
- The function
calc.nPathways
estimates the number of pathways based on the number of genes. - The function
calc.nGenes
estimates the number of genes based on the number of pathways. - The function
estimate.nGenes
estimates the number of genes based on the genes per pathways. - The function
estimate.nPathaways
estimates the number of pathways based on the pathways per gene.
We need to introduce other estimates, we need a better naming scheme
from gseadv.
Simplify, use one estimate function exported to the user and then use underlying functions depending on the information provided.
Still the functions should be named somehow, perhaps based on the information provided.
However this solution would mean that the output is inconsistent between different input parameters, sometimes a number, sometimes a vector.
It would mean any special print function?
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Better provide a data.frame such like tidymodels (estimate, max, min) or something alike. If it cannot be calculated report NA
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Related Issues (20)
- Compare same terms in different GeneSetCollections HOT 2
- Calculate the number of combinations that exists HOT 1
- Introduce helper to extract information from genes and pathways
- Provide functions for entropy and mutual information
- Example
- Use the Kullback-Leibler distance
- Check if all genes are connected HOT 2
- Local adjacency
- Graph from GeneSetCollections
- Make it more general HOT 3
- Check out PathwaysCommons HOT 2
- See if this HOT 1
- Avoid Vectorize function HOT 1
- Statistical behind HOT 2
- Improve README
- Appveyor
- Related work HOT 1
- Antitesis of add HOT 1
- Use dynamic programming in the functions `from*` HOT 1
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