Issues Running MP-EST (v3.0) about mp-est

[Sourirewang]

Hello,
@zoedennehy, sorry to bother you. Have you found a solution? I encountered the same error (Segmentation fault), and the taxa number in my gene trees also varies.

Best wishes,
Sourire

[zoedennehy]

Hi @Sourirewang,

Unfortunately, I have not been able to find a solution! If you are able to get MP-EST to run, please let me know as it would be great to include the results in my analysis.

Best wishes,
Zoë

[vinjlynch]

Having a similar problem with a large dataset (>13k trees, and 250 species), has anyone found a solution?

Best,
Vinny

[lliu1871]

In mpest.h, the current setting is

#define NTAXA 200 /* max # of species */

Please change it to

#define NTAXA 300 /* max # of species */

and recompile the source code.

[vinjlynch]

Thanks for the quick reply! I changed NTAXA to 300, but I still get the segmentation fault (the testgenetree example runs fine). Any other suggestions?

[lliu1871]

Can you send me the input file? my email is ***@***.******@***.***>. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)<https://faculty.franklin.uga.edu/lliu/> On Nov 9, 2023, at 9:44 AM, vinjlynch ***@***.***> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks for the quick reply! I changed NTAXA to 300, but I still get the segmentation fault (the testgenetree example runs fine). Any other suggestions? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQXZBYPAX4ITUQKYASLYDTT6VAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBTHE3DMNJQGU>. You are receiving this because you commented.Message ID: ***@***.***>

[vinjlynch]

Thanks, and happy to. Your email address is still hidden, is it ****@uga.edu?

[lliu1871]

Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)<https://faculty.franklin.uga.edu/lliu/> On Nov 9, 2023, at 11:42 AM, vinjlynch ***@***.***> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it ***@***.***? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE>. You are receiving this because you commented.Message ID: ***@***.***>

[lovelynewGao]

Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.***>

sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice?

[vinjlynch]

Unfortunately, it was never resolved; if you find a solution, let me know! Best, Vinny Vincent J. Lynch, Ph.D. Associate Professor Department of Biological Sciences University at Buffalo, SUNY 551 Cooke Hall Buffalo NY, 14260 ***@***.*** https://devoevomedlab.cargo.site https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en “... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862) "There is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that whilst this planet has gone on cycling according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859)

…

On Feb 28, 2024, at 9:22 AM, Lovelynew Gao ***@***.***> wrote: You don't often get email from ***@***.*** Learn why this is important <https://aka.ms/LearnAboutSenderIdentification> Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0> On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment) <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1804179861&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463621223%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=k2xJOcQp7P3THUsnNOFpm8Ge5hAxca7nlnts%2FOUFstI%3D&reserved=0>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463630991%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=j3dmyZRc3edZHvcabIT%2FuZZg2xaEwCO04cvh5e8XR5c%3D&reserved=0>. You are receiving this because you commented.Message ID: @.***> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1969089502&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463638784%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=sCgF9jj5ktYFW9VZmz205QHJIepxaLLOE3ub%2FCpKhGo%3D&reserved=0>, or unsubscribe <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANAFRRAQLUJZPNKDA6TVLULYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463645783%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=wAMFLdGBXagNtQx2s9mLRoSlG8gfbXVqgKEX4cpNybk%3D&reserved=0>. You are receiving this because you commented.

[lliu1871]

Could you send me your input tree file? Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)<http://faculty.franklin.uga.edu/lliu/> From: Lovelynew Gao ***@***.***> Date: Wednesday, February 28, 2024 at 09:22 To: lliu1871/mp-est ***@***.***> Cc: Liang Liu ***@***.***>, Comment ***@***.***> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)<#5 (comment)>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.***> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQSW3DDI4U4VQSAVFQTYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI>. You are receiving this because you commented.Message ID: ***@***.***>

[lliu1871]

Vinny, I thought it was resolved. Sorry if not. Please send me the input tree file. Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)<http://faculty.franklin.uga.edu/lliu/> From: vinjlynch ***@***.***> Date: Wednesday, February 28, 2024 at 09:35 To: lliu1871/mp-est ***@***.***> Cc: Liang Liu ***@***.***>, Comment ***@***.***> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Unfortunately, it was never resolved; if you find a solution, let me know! Best, Vinny Vincent J. Lynch, Ph.D. Associate Professor Department of Biological Sciences University at Buffalo, SUNY 551 Cooke Hall Buffalo NY, 14260 ***@***.*** https://devoevomedlab.cargo.site https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en “... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862) "There is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that whilst this planet has gone on cycling according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859)

On Feb 28, 2024, at 9:22 AM, Lovelynew Gao ***@***.***> wrote: You don't often get email from ***@***.*** Learn why this is important <https://aka.ms/LearnAboutSenderIdentification> Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0> On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment) <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1804179861&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463621223%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=k2xJOcQp7P3THUsnNOFpm8Ge5hAxca7nlnts%2FOUFstI%3D&reserved=0>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463630991%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=j3dmyZRc3edZHvcabIT%2FuZZg2xaEwCO04cvh5e8XR5c%3D&reserved=0>. You are receiving this because you commented.Message ID: @.***> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1969089502&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463638784%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=sCgF9jj5ktYFW9VZmz205QHJIepxaLLOE3ub%2FCpKhGo%3D&reserved=0>, or unsubscribe <https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANAFRRAQLUJZPNKDA6TVLULYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463645783%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=wAMFLdGBXagNtQx2s9mLRoSlG8gfbXVqgKEX4cpNybk%3D&reserved=0>. You are receiving this because you commented.

— Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZITQVWAV3XJ4BVW3NOTCTYV46BTAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGEYTSNRVGE>. You are receiving this because you commented.Message ID: ***@***.***>

[lovelynewGao]

Could you send me your input tree file? Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)http://faculty.franklin.uga.edu/lliu/ From: Lovelynew Gao @.> Date: Wednesday, February 28, 2024 at 09:22 To: lliu1871/mp-est @.> Cc: Liang Liu @.>, Comment @.> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from @.*** Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment)<#5 (comment)>>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE. You are receiving this because you commented.Message ID: @.> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQSW3DDI4U4VQSAVFQTYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI. You are receiving this because you commented.Message ID: @.>

thank you for your reply, I have send it to your email. Thanks~

[jungleblack007]

Vinny, I thought it was resolved. Sorry if not. Please send me the input tree file. Liang ``````````````````````````````````````````````````````````````````````````````` Liang Liu Graduate advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)http://faculty.franklin.uga.edu/lliu/ From: vinjlynch @.> Date: Wednesday, February 28, 2024 at 09:35 To: lliu1871/mp-est @.> Cc: Liang Liu @.>, Comment @.> Subject: Re: [lliu1871/mp-est] Issues Running MP-EST (v3.0) (Issue #5) You don't often get email from @.*** Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Unfortunately, it was never resolved; if you find a solution, let me know! Best, Vinny Vincent J. Lynch, Ph.D. Associate Professor Department of Biological Sciences University at Buffalo, SUNY 551 Cooke Hall Buffalo NY, 14260 @.*** https://devoevomedlab.cargo.site https://scholar.google.com/citations?user=PBV6PjEAAAAJ&hl=en “... the most useful thing we can do is to repudiate, and so we repudiate” – I. Turgenev, Fathers and Sons (1862) "There is a grandeur in this view of life, with its several powers, having been originally breathed into a few forms or into one; and that whilst this planet has gone on cycling according to the fixed laws of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.” – C. Darwin, On The Origin of Species (1859)
On Feb 28, 2024, at 9:22 AM, Lovelynew Gao @.> wrote: You don't often get email from @. Learn why this is important https://aka.ms/LearnAboutSenderIdentification Yes, it is lliu at uga dot edu. Liang ------------------------------------- Liang Liu Graduate Advisor Department of Statistics Institute of Bioinformatics University of Georgia Phylogenetics Lab | Phylogenetics Lab (uga.edu)https://faculty.franklin.uga.edu/lliu/ https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Ffaculty.franklin.uga.edu%2Flliu%2F&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463608932%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=a%2FLHOyXhmkzitgXWwyXqD3HLvYnaLgkv37fLJVihm50%3D&reserved=0 On Nov 9, 2023, at 11:42 AM, vinjlynch @.> wrote: [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Thanks, and happy to. Your email address is still hidden, is it @.? — Reply to this email directly, view it on GitHub<#5 (comment) https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1804179861&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463621223%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=k2xJOcQp7P3THUsnNOFpm8Ge5hAxca7nlnts%2FOUFstI%3D&reserved=0>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FACZITQWKONQQHDWONR7W6EDYDUBXJAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGE3TSOBWGE&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463630991%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=j3dmyZRc3edZHvcabIT%2FuZZg2xaEwCO04cvh5e8XR5c%3D&reserved=0. You are receiving this because you commented.Message ID: @.> sorry to bother you, have you a solution about this error? I have encountered the same error of Segmentation fault (core dumped). And I form my input file just like the example testgenetree file, so I have no idea about the error. Could you please give me some advice? — Reply to this email directly, view it on GitHub https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Flliu1871%2Fmp-est%2Fissues%2F5%23issuecomment-1969089502&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463638784%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=sCgF9jj5ktYFW9VZmz205QHJIepxaLLOE3ub%2FCpKhGo%3D&reserved=0, or unsubscribe https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FANAFRRAQLUJZPNKDA6TVLULYV44R7AVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGA4DSNJQGI&data=05%7C02%7Cvjlynch%40buffalo.edu%7Ca0c5956788ee4613066f08dc3868af04%7C96464a8af8ed40b199e25f6b50a20250%7C0%7C0%7C638447269463645783%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=wAMFLdGBXagNtQx2s9mLRoSlG8gfbXVqgKEX4cpNybk%3D&reserved=0. You are receiving this because you commented.
— Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACZITQVWAV3XJ4BVW3NOTCTYV46BTAVCNFSM6AAAAAAYKRNWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNRZGEYTSNRVGE. You are receiving this because you commented.Message ID: @.>

I met the same segment fault with 10 species and 857 genes ... I will send you my file, thanks